Modern simulation utilities for genetic analysis

SimOutUtils - Utilities for analyzing simulation output

SimOutUtils is a suite of MATLAB/Octave functions for studying and analyzing time series-like output from stochastic simulation models. More specifically, SimOutUtils allows modelers to study and visualize simulation output dynamics, perform distributional analysis of output statistical summaries, as well as compare these summaries in order to assert the statistical equivalence of two or more m...

Modern Industrial Simulation Tools

This report documents the work performed under the project, Modern Industrial Simulation Tools: Kernel-Level Integration of High Performance Parallel Processing, Object-Oriented Numerics, and Adaptive Finite Element Analysis [1]. This project was performed under the auspices of the Department of Energy (DOE), High Performance Parallel Processing (HPPP) program. This work spans the period from A...

Development Strategies for Modern Predictive Simulation Codes

c © 2007 by John von Neumann Institute for Computing Permission to make digital or hard copies of portions of this work for personal or classroom use is granted provided that the copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. To copy otherwise requires prior specific permission by the publisher ment...

Analysis of paternal genetic relationship of ancient Hungarian, modern Hungarian and modern Szekler populations

Genetic Analysis Workshop 17 mini-exome simulation

The data set simulated for Genetic Analysis Workshop 17 was designed to mimic a subset of data that might be produced in a full exome screen for a complex disorder and related risk factors in order to permit workshop participants to investigate issues of study design and statistical genetic analysis. Real sequence data from the 1000 Genomes Project formed the basis for simulating a common disea...